Others titles
- NARMS Animal Isolates Veterinary Antibiotics
- NARMS Animal Isolates Antibacterial Resistance
- NARMS Animal Isolates Antimicrobial Medicines
- NARMS Animal Isolates Anti Microbial
Keywords
- Veterinary Antibiotics
- Antibacterial Resistance
- Antimicrobial Medicines
- Anti Microbial Drugs
- Animal Isolates
- Diagnostic Animal Specimens
- Antimicrobial Resistance
NARMS Food Animal Isolate Data
The National Antimicrobial Resistance Monitoring System (NARMS) Animal Isolates provides data that comprises the testing of isolates obtained from diagnostic animal specimens, healthy on-farm animals, and food-producing animals at slaughter. These tests on retail samples were performed by FDA.
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Description
In an effort to prospectively monitor the occurrence of antimicrobial resistance of zoonotic pathogens from human diagnostic specimens, retail meats and food animals, the National Antimicrobial Resistance Monitoring System (NARMS) was established in 1996 by the Food and Drug Administration’s Center for Veterinary Medicine in collaboration with the Centers for Disease Control and Prevention (CDC), and the United States Department of Agriculture (USDA).
The animal component of NARMS is housed within the Bacterial Epidemiology and Antimicrobial Resistance Research Unit (BEAR) of the Agricultural Research Service (ARS) in Athens, Georgia. The animal component of NARMS comprises the testing of isolates obtained from diagnostic animal specimens, healthy on-farm animals, and food-producing animals at slaughter. The panel of antimicrobial agents chosen is representative of common antimicrobials used in both human and veterinary medicine. Non-typhoid Salmonella was chosen as a sentinel organism of the animal component of NARMS which was launched in 1997. Testing of Campylobacter isolates began in 1998 while Escherichia coli and Enterococcus were included in 2000.
The goals and objectives of the monitoring program are to:
1. Monitor trends in antimicrobial resistance among foodborne bacteria from humans, retail meats, and animals
2. Disseminate timely information on antimicrobial resistance to promote interventions that reduce resistance among foodborne bacteria
3. Conduct research to better understand the emergence, persistence, and spread of antimicrobial resistance
4. Assist the FDA in making decisions related to the approval of safe and effective antimicrobial drugs for animals
About this Dataset
Data Info
Date Created | 1997 |
---|---|
Last Modified | 2022-04-19 |
Version | 2022-04-19 |
Update Frequency |
Annual |
Temporal Coverage |
1997 - 2005 |
Spatial Coverage |
United States |
Source | John Snow Labs; Centers of Disease Control and Prevention (CDC), FDA’s Center for Veterinary Medicine (FDA), U.S. Department of Agriculture (USDA); |
Source License URL | |
Source License Requirements |
N/A |
Source Citation |
N/A |
Keywords | Veterinary Antibiotics, Antibacterial Resistance, Antimicrobial Medicines, Anti Microbial Drugs, Animal Isolates, Diagnostic Animal Specimens, Antimicrobial Resistance |
Other Titles | NARMS Animal Isolates Veterinary Antibiotics, NARMS Animal Isolates Antibacterial Resistance, NARMS Animal Isolates Antimicrobial Medicines, NARMS Animal Isolates Anti Microbial |
Data Fields
Name | Description | Type | Constraints |
---|---|---|---|
Sample_id | A code that uniquely identifies a bacteria isolate. The code may be broken down into state, year, month, source type, and sequence. | string | required : 1 |
Genus_of_Bacterial_Isolate | Value: Salmonella, Campylobacter, Shigella, Escherichia | string | required : 1 |
Species_of_Bacterial_Isolate | Either the specific species name of the genus found in this isolate or a grouping such as "Other" for reporting purposes. | string | - |
Serotype_of_Bacterial_Isolate | Either the specific serotype name found in this isolate or a grouping such as "Other" for reporting purposes. | string | - |
Year_of_Sample_Collection | The year in which the sample was collected. | date | - |
Acquisition_Date | The date that the sample was collected. | date | - |
Host_Species | The name of the host species that was the source of the sample. Valid values are: Humans, Chickens, Turkeys, Cattle, and Swine. | string | required : 1 |
Amoxicillin_Clavulanic_Acid_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Amoxicillin-Clavulanic acid) | string | - |
Amoxicillin_Clavulanic_Acid_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Amoxicillin-Clavulanic acid) | number | level : Ratio |
Amikacin_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Amikacin) | string | - |
Amikacin_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus.(Amikacin) | number | level : Ratio |
Ampicillin_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Ampicillin) | string | - |
Ampicillin_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus.(Ampicillin) | integer | level : Ratio |
Apramycin_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Apramycin) | string | - |
Apramycin_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus.(Apramycin) | number | level : Ratio |
Ceftriaxone_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Ceftriaxone) | string | - |
Ceftriaxone_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Ceftriaxone) | number | level : Ratio |
Azithromycin_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Azithromycin) | string | - |
Azithromycin_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Azithromycin) | number | level : Ratio |
Cephalothin_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Cephalothin) | string | - |
Cephalothin_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Cephalothin) | integer | level : Ratio |
Chloramphenicol_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Chloramphenicol) | string | - |
Chloramphenicol_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Chloramphenicol) | number | level : Ratio |
Ciprofloxacin_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Ciprofloxacin) | string | - |
Ciprofloxacin_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Ciprofloxacin) | number | level : Ratio |
Clindamycin_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Clindamycin) | string | - |
Clindamycin_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Clindamycin) | number | level : Ratio |
Trimethoprim_Sulfamethoxazole_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Trimethoprim-Sulfamethoxazole) | string | - |
Trimethoprim_Sulfamethoxazole_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Trimethoprim-Sulfamethoxazole) | number | level : Ratio |
Daptomycin_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Daptomycin) | string | - |
Daptomycin_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Daptomycin) | number | level : Ratio |
Erythromycin_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Erythromycin) | string | - |
Erythromycin_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Erythromycin) | number | level : Ratio |
Florfenicol_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Florfenicol) | string | - |
Florfenicol_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Florfenicol) | number | level : Ratio |
Sulfisoxazole_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Sulfisoxazole) | string | - |
Sulfisoxazole_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Sulfisoxazole) | integer | level : Ratio |
Cefoxitin_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Cefoxitin) | string | - |
Cefoxitin_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Cefoxitin) | number | level : Ratio |
Gentamicin_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Gentamicin) | string | - |
Gentamicin_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Gentamicin) | number | level : Ratio |
Imipenem_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Imipenem) | string | - |
Imipenem_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Imipenem) | number | level : Ratio |
Kanamycin_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Kanamycin) | string | - |
Kanamycin_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Kanamycin) | integer | level : Ratio |
Lincomycin_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Lincomycin) | string | - |
Lincomycin_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Lincomycin) | integer | level : Ratio |
Linezolid_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Linezolid) | string | - |
Linezolid_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Linezolid) | number | level : Ratio |
Nalidixic_Acid_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Nalidixic Acid) | string | - |
Nalidixic_Acid_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Nalidixic Acid) | number | level : Ratio |
Nitrofurantoin_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Nitrofurantoin) | string | - |
Nitrofurantoin_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Nitrofurantoin) | integer | level : Ratio |
Penicillin_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Penicillin) | string | - |
Penicillin_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Penicillin) | number | level : Ratio |
Quinupristin_Dalfopristin_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Quinupristin-Dalfopristin) | string | - |
Quinupristin_Dalfopristin_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Quinupristin-Dalfopristin) | number | level : Ratio |
Sulfamethoxazole_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Sulfamethoxazole) | string | - |
Sulfamethoxazole_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Sulfamethoxazole) | integer | level : Ratio |
Streptomycin_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Streptomycin) | string | - |
Streptomycin_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Streptomycin) | integer | level : Ratio |
Telithromcyin_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Telithromcyin) | string | - |
Telithromcyin_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Telithromcyin) | number | level : Ratio |
Tetracycline_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Tetracycline) | string | - |
Tetracycline_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Tetracycline) | number | level : Ratio |
Tigecycline_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Tigecycline) | string | - |
Tigecycline_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Tigecycline) | number | level : Ratio |
Ceftiofur_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Ceftiofur) | string | - |
Ceftiofur_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Ceftiofur) | number | level : Ratio |
Tylosin_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Tylosin) | string | - |
Tylosin_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Tylosin) | number | level : Ratio |
Vancomycin_Operator | An operator that when used in conjunction with the given concentration indicates the MIC for this drug genus combination. Valid values are: <, <=, =, >=, > . (Vancomycin) | string | - |
Vancomycin_Concentration | The given concentration that when used in conjunction with the operator indicates the MIC for this isolate and bacteria genus. (Vancomycin) | number | level : Ratio |
Data Preview
Sample id | Genus of Bacterial Isolate | Species of Bacterial Isolate | Serotype of Bacterial Isolate | Year of Sample Collection | Acquisition Date | Host Species | Amoxicillin Clavulanic Acid Operator | Amoxicillin Clavulanic Acid Concentration | Amikacin Operator | Amikacin Concentration | Ampicillin Operator | Ampicillin Concentration | Apramycin Operator | Apramycin Concentration | Ceftriaxone Operator | Ceftriaxone Concentration | Azithromycin Operator | Azithromycin Concentration | Cephalothin Operator | Cephalothin Concentration | Chloramphenicol Operator | Chloramphenicol Concentration | Ciprofloxacin Operator | Ciprofloxacin Concentration | Clindamycin Operator | Clindamycin Concentration | Trimethoprim Sulfamethoxazole Operator | Trimethoprim Sulfamethoxazole Concentration | Daptomycin Operator | Daptomycin Concentration | Erythromycin Operator | Erythromycin Concentration | Florfenicol Operator | Florfenicol Concentration | Sulfisoxazole Operator | Sulfisoxazole Concentration | Cefoxitin Operator | Cefoxitin Concentration | Gentamicin Operator | Gentamicin Concentration | Imipenem Operator | Imipenem Concentration | Kanamycin Operator | Kanamycin Concentration | Lincomycin Operator | Lincomycin Concentration | Linezolid Operator | Linezolid Concentration | Nalidixic Acid Operator | Nalidixic Acid Concentration | Nitrofurantoin Operator | Nitrofurantoin Concentration | Penicillin Operator | Penicillin Concentration | Quinupristin Dalfopristin Operator | Quinupristin Dalfopristin Concentration | Sulfamethoxazole Operator | Sulfamethoxazole Concentration | Streptomycin Operator | Streptomycin Concentration | Telithromcyin Operator | Telithromcyin Concentration | Tetracycline Operator | Tetracycline Concentration | Tigecycline Operator | Tigecycline Concentration | Ceftiofur Operator | Ceftiofur Concentration | Tylosin Operator | Tylosin Concentration | Vancomycin Operator | Vancomycin Concentration |
BEAR002139 | C | jejuni | 2001 | Chickens | = | 0.047 | = | 1.0 | = | 0.064 | = | 0.125 | = | 0.25 | = | 0.38 | = | 4 | = | 0.5 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
BEAR002140 | C | coli | 2001 | Chickens | = | 0.032 | = | 2.0 | = | 0.094 | = | 0.047 | = | 0.25 | = | 0.38 | = | 12 | = | 256.0 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
BEAR002141 | C | coli | 2001 | Chickens | = | 0.125 | = | 2.0 | = | 0.064 | = | 0.25 | = | 1.0 | = | 0.38 | = | 8 | = | 256.0 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
BEAR002142 | C | coli | 2001 | Chickens | = | 0.047 | = | 1.0 | = | 0.094 | = | 0.047 | = | 0.125 | = | 0.19 | = | 8 | = | 256.0 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
BEAR002143 | C | coli | 2001 | Chickens | = | 0.023 | = | 0.75 | = | 0.047 | = | 0.047 | = | 0.19 | = | 0.19 | = | 6 | = | 256.0 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
BEAR002144 | C | jejuni | 2001 | Chickens | = | 0.047 | = | 1.5 | = | 32.0 | = | 0.125 | = | 0.19 | = | 0.125 | = | 256 | = | 256.0 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
BEAR002145 | C | jejuni | 2001 | Chickens | = | 0.047 | = | 0.75 | = | 0.047 | = | 0.125 | = | 0.19 | = | 0.75 | = | 3 | = | 0.25 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
BEAR002146 | C | jejuni | 2001 | Chickens | = | 0.094 | = | 1.0 | = | 0.125 | = | 0.25 | = | 0.25 | = | 0.5 | = | 3 | = | 0.38 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
BEAR002147 | C | jejuni | 2001 | Chickens | = | 0.125 | = | 2.0 | = | 32.0 | = | 0.125 | = | 0.25 | = | 0.19 | = | 256 | = | 256.0 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
BEAR002148 | C | coli | 2001 | Chickens | = | 0.094 | = | 2.0 | = | 0.125 | = | 0.19 | = | 1.5 | = | 1.0 | = | 8 | = | 1.0 |